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  • Introduction to organic structure and bonding, part II

Organic Chemistry with a Biological Emphasis Volume 1

Tim Soderberg

Chapter 2

Introduction to organic structure and bonding, part II - all with Video Answers

Educators

Chapter Questions

04:43

Problem 1

For each of the bonds indicated by arrows b-f in the figures below, describe the bonding picture. An example is given for bond 'a'. Note that for a double bond (bond 'c'), you will need to describe two bonds. Note: you are being asked to describe the bonding picture for one specific resonance contributor. bond a: "this is a $\sigma$ bond formed by the overlap of an $s p^{3}$ orbital on one carbon and an $s p^{2}$ orbital on another carbon."

Anupa Sharad Medhekar
Anupa Sharad Medhekar
Numerade Educator
04:19

Problem 2

a) Draw curved arrows showing how each of the resonance contributors on the left could be converted to the one on the right.
b) Label contributors as major, minor, or approximately equivalent to each other.

Benjamin Angeles
Benjamin Angeles
Numerade Educator
02:47

Problem 3

Draw a 3 D-accurate picture showing the orbitals involved in bonding in the molecules below. Draw all bonds, both $\sigma$ and $\pi,$ as overlapping orbitals. Indicate whether each orbital is $s, p, s p, s p^{2},$ or $s p^{3},$ and indicate (with words or a color scheme) orbitals that are pointed into or out of the plane of the page. Locate all lone pairs in their appropriate orbitals. It is highly recommended to check your drawing with your instructor or tutor. An example is provided for ethene, $\mathrm{CH}_{2} \mathrm{CH}_{2}:$
a) dimethyl ether $\left(\mathrm{CH}_{3} \mathrm{OCH}_{3}\right)$
b) ethanol $\left(\mathrm{CH}_{3} \mathrm{CH}_{2} \mathrm{OH}\right)$
c) acetaldehyde $\left(\mathrm{CH}_{3} \mathrm{COH}\right)$
d) hydrogen cyanide (HCN)

Shalini Tyagi
Shalini Tyagi
Numerade Educator
03:24

Problem 4

Neither of the pairs of structures below are pairs of resonance contributors.
a) Explain why not.
b) What in fact is the relationship between them?

Bobby Barnes
Bobby Barnes
University of North Texas
03:23

Problem 5

a-i) Describe the orbitals involved in the bonds indicated by the arrows, as in problem 2.1

Ian Kaigh
Ian Kaigh
Numerade Educator
01:49

Problem 6

The four compounds below appeared in the October 9 and October 25,2006 issues of Chemical and Engineering News. $\mathrm{a}-\mathrm{k}$ ) For each bond indicated by an arrow, specify the types of orbitals that are overlapping (for example, overlap between two $s p 3$ -hybridized carbons would be denoted $\left.\mathrm{C}_{s p 3}-\mathrm{C}_{s p 3}\right)$ I) (functional group review) Which compound contains two aldehydes? Which contains an ether? Which contains an amide? Which contains a terminal alkene? Which contains an amine (and is this amine primary, secondary, tertiary, or quaternary?)
$\mathrm{m}$ ) Give the molecular formula for the walking-stick compound

Lottie Adams
Lottie Adams
Numerade Educator
03:09

Problem 7

Rank the bonds a-f below according to increasing bond length.

Ian Kaigh
Ian Kaigh
Numerade Educator
02:49

Problem 8

Redraw the structure below, showing the $2 \mathrm{p}_{z}$ orbitals that make up the conjugated $\pi$ bond system.

Emerson G
Emerson G
Numerade Educator
01:04

Problem 9

Draw two different (minor) resonance contributors of the structure below (the flavin group of flavin adenine dinucleotide (FAD), a biochemical oxidation/reduction molecule) in which the oxygen indicated by an arrow bears a negative formal charge and one of the circled atoms bears a positive formal charge. Include curved arrows to account for the changing positions of electrons and $\pi$ bonds.

David Collins
David Collins
Numerade Educator
05:24

Problem 10

The structure below shows an intermediate species in a reaction involving the amino acid alanine, attached to pyridoxal phosphate (vitamin B6). Draw a resonance contributor in which the only formal charges are on the oxygens.

Colton Wang
Colton Wang
Numerade Educator
04:27

Problem 11

Below is the structure of the cholesterol-lowering drug Lovastatin. Predict the trend in bond length for
a) bonds $\mathrm{a}, \mathrm{b}, \mathrm{c},$ and $\mathrm{d}$
b) bonds e and $\mathrm{f}$

A. Elizabeth Hildreth
A. Elizabeth Hildreth
Numerade Educator
05:23

Problem 12

In problem $\mathrm{P} 1.10$, you were asked to draw four different amides with molecular formula $\mathrm{C}_{3} \mathrm{H}_{7} \mathrm{NO} .$ One of these constitutional isomers is significantly less soluble in water than the other three. Which one, and why?

Freddie Montague
Freddie Montague
Numerade Educator
02:29

Problem 13

Below is the structure of Rimonabant, a drug candidate which is being tested as a possible treatment for alcohol/tobacco dependence and obesity (see Chemical and Engineering News, October $15,2006,$ p. 24 ). Draw minor resonance contributors in which:
a) there is a separation of charge between the nitrogen indicated by the arrow and the oxygen.
b) there is a separation of charge between a chlorine (positive) and one of the three nitrogens.

David Collins
David Collins
Numerade Educator
04:45

Problem 14

For the molecules below, draw minor resonance contributors in which formal charges are placed on the atoms indicated by arrows. Use curved arrows to show how you are rearranging electrons between resonance contributors.

Benjamin Angeles
Benjamin Angeles
Numerade Educator
05:15

Problem 15

Genipin was recently identified as the active compound in gardenia fruit extract, a traditional Chinese medicine for the treatment of diabetes (Chemical and Engineering News June $12,2006,$ p. $34 ;$ Cell Metab. 2006,3,417 ). Resonance contributors can be drawn in which the oxygen atom indicated by an arrow bears a positive formal charge. Indicate where the corresponding negative formal charge would be located in the most important of these contributors.

Bin Chen
Bin Chen
Numerade Educator
00:28

Problem 16

Identify any isolated alkene groups in the PAC-1 structure in problem $\mathrm{P} 2.14$, and in the genipin structure in problem $\mathrm{P} 2.15$.

Aadit Sharma
Aadit Sharma
Numerade Educator
03:18

Problem 17

The February 27,2006 issue of Chemical and Engineering News contains an interesting article on the 100 th birthday of Albert Hofmann, the inventor of the hallucinogen LSD. The structure of LSD is shown below. Several minor resonance contributors can be drawn in which the nitrogen atom indicated by an arrow bears a positive formal charge. Indicate atoms where a corresponding negative formal charge could be located in these contributors.

Arpit Gupta
Arpit Gupta
Numerade Educator
00:47

Problem 18

The human brain contains naturally occurring cannabinoid compounds which are related in structure to $\Delta^{9}$ -tetrahydrocannabinol, the active compound in cannabis. Cannabinoids are thought to exert an antidepressant effect. Researchers at the University of California, Irvine are studying synthetic compounds, such as the one shown below, which inhibit the degradation of natural cannabinoids in the brain. This compound has been shown to have antidepressant-like effects in rats and mice. (Chemical and Engineering News, December 19, 2005, p.47; Proc. Natl. Acad. Sci. USA 2005,102, $18620 .)$
a) Several minor resonance contributors can be drawn in which the oxygen atom indicated by an arrow bears a positive formal charge. Indicate atoms where a corresponding negative formal charge could be located in these contributors.
b) Answer the same question again, this time with the structural isomer shown below.

Joanna Quigley
Joanna Quigley
Numerade Educator
01:10

Problem 19

Give the expected trend (lowest to highest) in boiling points for the following series of compounds.
a
b
c
d

Aadit Sharma
Aadit Sharma
Numerade Educator
05:19

Problem 20

For each pair of molecules below, choose the one that is more water-soluble, and explain your choice.
a
b
c
d
e

Keenan Mintz
Keenan Mintz
University of Miami
05:02

Problem 21

Intermolecular forces: For $a-c$ below, you may want to review amino acid/protein structure basics in section $1.3 \mathrm{D}$ and Table 5 at the end of the book. Use abbreviations as appropriate to focus the viewer's attention on the interaction in question.
a) Which of the 20 natural amino acids have side chains capable of forming hydrogen bonds with water?
b) Draw a picture of a hydrogen bond in a protein between an alanine main chain nitrogen and a glutamate side chain.
c) Draw a picture of a hydrogen bond in a protein between a tyrosine main chain (acting as donor) and a threonine side chain (acting as acceptor).
d) Draw a picture of an charge-charge (ionic) interaction in a protein between an aspartate and a lysine.

Charles Thomas
Charles Thomas
Numerade Educator
03:29

Problem 22

In properly folded protein structures, main chain nitrogens often participate in hydrogen bonding interactions in the role of donor, but rarely as acceptor. Speculate as to why this might be so, using what you have learned in this chapter.

Shazia Naz
Shazia Naz
Numerade Educator
01:03

Problem 23

Ozone, $\mathrm{O}_{3}$, is an uncharged, non-cyclic molecule. Draw a Lewis structure for ozone. Are the two oxygen-oxygen bonds the likely to be the same length? What is the bond order? Explain.

Aadit Sharma
Aadit Sharma
Numerade Educator
02:13

Problem 24

Imagine that you hear a description of the bonding in water as being derived directly from the atomic orbital theory, without use of the hybrid orbital concept. In other words, the two bonds would be formed by the overlap of the half-filled $2 \mathrm{py}$ and $2 \mathrm{pz}_{z}$ orbitals of oxygen with the 1 s orbitals of hydrogen, while the two lone pairs on oxygen would occupy the $2 \mathrm{~s}$ and $2 \mathrm{p}_{\mathrm{x}}$ orbitals. What is wrong with this picture? How would the bonding geometry differ from what is actually observed for water?

Adriano Chikande
Adriano Chikande
Numerade Educator
17:26

Problem 25

a) Draw a picture showing the geometry of the overlapping orbitals that form the bonding network in allene, $\mathrm{H}_{2} \mathrm{CCCH}_{2}$. Then, draw a Lewis structure for the molecule, using the solid/dash wedge bond convention as necessary to indicate the correct geometry of the $\sigma$ bonds.
b) Draw a picture showing the geometry of the overlapping orbitals that form the bonding network in carbon dioxide.

America Guerrero
America Guerrero
Numerade Educator
05:03

Problem 26

Below is the structure of ropinerol, a drug made by GlaxoSmithKline for the treatment of Parkinson's disease. Is the five-membered ring part of the aromatic system? Explain your answer.

Susan Hallstrom
Susan Hallstrom
Numerade Educator
01:52

Problem 27

Classify each of the molecules/ions below as aromatic or not aromatic. Explain your reasoning.

Ian Kaigh
Ian Kaigh
Numerade Educator
15:58

Problem 28

For each of the compounds below, several minor resonance contributors can be drawn in which the atom indicated by an arrow bears a positive formal charge. Circle all atoms which could bear the corresponding negative formal charge.

Anupa Sharad Medhekar
Anupa Sharad Medhekar
Numerade Educator
15:58

Problem 29

For each of the compounds below, several minor resonance contributors can be drawn in which the atom indicated by an arrow bears a negative formal charge. Circle all atoms which could bear the corresponding positive formal charge.

Anupa Sharad Medhekar
Anupa Sharad Medhekar
Numerade Educator
02:20

Problem 30

In each of the cation structures below, circle all carbon atoms to which the positive formal charge can be delocalized by resonance.

Raghvendra Singh
Raghvendra Singh
Numerade Educator